Pathogen Detection data at Google Cloud Platform is updated daily, so updated results may lag behind results presented in the browsers or on FTP by up to one day. , and Project 3: Selection analysis on 293-aa blaKPC genes for examples of how to use NCBI Pathogen Detection data in the cloud.
See the Workshop Setup, Project 1: Use BigQuery to search MicroBIGG-E and Isolates data, Project 2: Generate tree of KPC alleles to examine evolution of size variants We participated in a workshop at ASM NGS 2022 which included some projects that demonstrate how to use our resources in the cloud. Email us with questions or feedback at NGS 2022 Workshop.BioProject Hierarchy at GCP - All data BioProjects for isolates in the Pathogen Detection browsers as well as any parent umbrella BioProjects they are children of.MicroBIGG-E at GCP - The data from the Microbial Browser for the Identification of Genetic and Genomic Elements ( MicroBIGG-E) - Information about, and contig and protein seqeunces for genes and point mutations identified in Pathogen Detection isolates by AMRFinderPlus.Isolates browser at GCP - The data from the Isolates Browser.Getting started with Google BigQuery - Information about how to use Google BigQuery for accessing NCBI Pathogen Detection data in BigQuery tables.YouTube video NCBI minute: Introduction to NCBI Pathogen Detection and antimicrobial resistance data in Google BigQuery and links to materials and information.MicroBIGG-E protein sequences in Google Storage bucketsÄocumentation for Pathogen Detection resources at Google Cloud.